No, the language clearly limits the restriction to those “aliens … currently outside the United States.” “Entry” in this context means seeking admission (or re-entry) to the U.S. from abroad, under a new petition or visa that starts outside. It is tied to new petitions, and specifically those where the beneficiary is abroad.

“(b) The Secretary of Homeland Security shall restrict decisions on petitions not accompanied by a $100,000 payment for H-1B specialty occupation workers … who are currently outside the United States …”